Linkedin
Research Lines • 

Health and Biomedical Informatics

Description

LASIGE presents a longstanding record of research contributions in the area of Health & Biomedical Informatics (HBI), by providing innovative solutions for processing biological and medical data, and for supporting the discovery of new biomedical insights. This research line aims to encompass all the scientific work in LASIGE where informatics plays a fundamental role in creating new knowledge in life and health sciences.

Scientific areas

  • Bioinformatics
  • Chemoinformatics
  • Text mining of biomedical literature and multilingual electronic medical records
  • Biomedical data mining, machine learning, and data analytics
  • Semantic web technologies, linked data and biomedical ontologies
  • Health and biomedical decision support systems
  • Technology adoption in health‐care
  • Ubiquitous health systems
  • Physiologic sensing and monitoring
  • Interaction design for healthcare
  • Biomedical data visualization, media and wellbeing
  • Storage and protection of large biomedical data
  • Biomedical data privacy

Leader:

Cátia Pesquita
Profile picture of
Alysson Bessani Integrated Researcher
Profile picture of
André Rodrigues Integrated Researcher
Profile picture of
Andreia Sofia Teixeira Integrated Researcher
Profile picture of
Carlos Duarte Integrated Researcher
Profile picture of
Cátia Pesquita Integrated Researcher
Profile picture of
Diogo Soares Integrated Researcher
Profile picture of
Francisco M. Couto Integrated Researcher
Profile picture of
Helena Aidos Integrated Researcher
Profile picture of
João Balsa da Silva Integrated Researcher
Profile picture of
João Bimbo Integrated Researcher
Profile picture of
Luís Carriço Integrated Researcher
Profile picture of
Manuel Fonseca Integrated Researcher
Profile picture of
Márcia Barros Integrated Researcher
Profile picture of
Maria Beatriz do Carmo Integrated Researcher
Profile picture of
Nuno Garcia Integrated Researcher
Profile picture of
Sara C. Madeira Integrated Researcher
Profile picture of
Soraia Meneses Alarcão Integrated Researcher
Profile picture of
Teresa Chambel Integrated Researcher
Profile picture of
Tiago Guerreiro Integrated Researcher
Profile picture of
Vinicius Cogo Integrated Researcher
Profile picture of
Ana Filipa Rodrigues PhD Collaborator
Profile picture of
Maria Fernandes PhD Collaborator
Profile picture of
Alexandre Fernandes Collaborator
Profile picture of
Andreia Martins Collaborator
Profile picture of
Francisca Ayres Ribeiro Collaborator
Beatriz Lopo Ferreira PhD Student
Profile picture of
Catarina Pereira PhD Student
Profile picture of
Duarte Saraiva PhD Student
Profile picture of
Eduardo Castanho PhD Student
Profile picture of
Eleonora Auletta PhD Student
Profile picture of
Filomena Sacomboia PhD Student
Profile picture of
João Pedro Mendes PhD Student
Profile picture of
Laura Balbi PhD Student
Lisana Daniel PhD Student
Profile picture of
Luana Afonso PhD Student
Profile picture of
Marta Silva PhD Student
Profile picture of
Maryam Lotfi PhD Student
Profile picture of
Matilde Pato PhD Student
Profile picture of
Pedro Ruas PhD Student
Profile picture of
Pedro Cotovio PhD Student
Profile picture of
Pedro Barbosa PhD Student
Profile picture of
Ricardo Carvalho PhD Student
Profile picture of
Rita Sousa PhD Student
Profile picture of
Sofia Conceição PhD Student
Profile picture of
Susana Nunes PhD Student
Ana Domingos MSc Student
Profile picture of
André G. Santos MSc Student
Profile picture of
André Mendes MSc Student
Profile picture of
André Dias MSc Student
Profile picture of
Beatriz Bernardino MSc Student
Profile picture of
Beatriz Moreira MSc Student
Profile picture of
Catarina Amorim MSc Student
Catarina Tomaz MSc Student
Profile picture of
Chiara Solito MSc Student
Profile picture of
Christopher Anaya MSc Student
Profile picture of
Cláudia Afonso MSc Student
Daniel Levandovschi MSc Student
Profile picture of
David Correia MSc Student
Profile picture of
David Conceição MSc Student
Profile picture of
Diogo Malatoto MSc Student
Donato Aveiro MSc Student
Profile picture of
Emanuelo Menkshi MSc Student
Profile picture of
Filipa Almendra MSc Student
Profile picture of
Filipe Paulino MSc Student
Profile picture of
Filipe Santos MSc Student
Profile picture of
Francisco Vicente MSc Student
Profile picture of
Francisco Ludovico MSc Student
Guilherme Cepeda MSc Student
Hugo Vieira MSc Student
Profile picture of
Hugo Figueiras MSc Student
Profile picture of
Inês Marcelino MSc Student
Profile picture of
Isabel Trancoso MSc Student
Profile picture of
Joana Carvoeiro MSc Student
Profile picture of
João Terroa MSc Student
Profile picture of
João Faia MSc Student
Profile picture of
João Gonçalves MSc Student
Profile picture of
João Vedor MSc Student
Profile picture of
João Fernandes MSc Student
Profile picture of
João Pedro Ferreira MSc Student
Joaquim Simões MSc Student
Profile picture of
Joel Oliveira MSc Student
Profile picture of
José Oliveira MSc Student
Profile picture of
Judite Ramos MSc Student
Leonor Carvalho MSc Student
Profile picture of
Madalena Girão MSc Student
Profile picture of
Maria Leonor Miranda MSc Student
Profile picture of
Matilde Carvalho MSc Student
Profile picture of
Natércia Soeiro MSc Student
Profile picture of
Nuno Silva MSc Student
Paulo Lopes MSc Student
Pedro Serrano MSc Student
Profile picture of
Rafaela Lopes MSc Student
Profile picture of
Rafaela Rodrigues MSc Student
Profile picture of
Ricardo Santos MSc Student
Robert Cachapa MSc Student
Profile picture of
Rute Patuleia MSc Student
Sean Gorman MSc Student
Profile picture of
Simona Losco MSc Student
Sona Moravcikova MSc Student
Profile picture of
Tiago Assis MSc Student
Profile picture of
Tiago Duarte MSc Student
Profile picture of
Tomás Oom MSc Student
Profile picture of
Vasco Maria MSc Student
Profile picture of
Filipe Marques Undergraduate Student
Profile picture of
Filipe Dávila Fernandes Undergraduate Student
Profile picture of
Vlad Simionca Undergraduate Student

ONGOING

Acronym Title Funding Entity Start Date End Date
HfPT Health from Portugal PRR- Portuguese Resilience and Recovery Plan 01/02/2023 31/12/2025
BRAINTEASER BRinging Artificial INTelligencE home for a better cAre of amyotrophic lateral sclerosis and multiple SclERosis EU H2020 01/01/2021 30/06/2025
AIpALS Advanced LearnIng Models using Patient Profiles and Disease Progression Patterns for Prognostic Prediction in ALS FCT 01/03/2021 28/02/2025
KATY Knowledge At the Tip of Your fingers: Clinical Knowledge for Humanity EU H2020 01/01/2021 31/12/2024

PAST

Acronym Title Funding Entity Start Date End Date
CIRCLES Controlling mIcRobiomes CircuLations for bEtter food Systems EU H2020 01/11/2018 31/10/2024
DKG Distributed Knowledge Graphs COST ACTION 23/09/2020 22/09/2024
THOR Computer Assisted Thoracic Assessment using POCUS FCT 01/03/2021 29/02/2024
DL-CADET Deep multimodal Learning for breast CAncer DETection FCT 01/01/2022 30/12/2023
AWESOME Awareness While Experiencing and Surfing On Movies through Emotions FCT 01/10/2018 30/09/2022
BINDER Improving Bio-Inspired Deep Learning for Radiomics FCT 01/10/2018 30/07/2022
iCare4U Decision support system for personalized medicine in ICUs FCT 01/06/2018 31/05/2022
PREDICT Personalized therapy for RhEumatic DIseases via machine learning FCT 01/01/2019 31/12/2021
SMiLax Semantic Mining with Linked Data FCT 01/07/2016 31/12/2020
NEUROCLINOMICS2 Unravelling Prognostic Markers in NEUROdegenerative diseases through CLINical and OMICS data integration FCT 01/07/2016 31/03/2020
PERSEIDS PERSEIDS – PERSONALIZING CANCER THERAPY THROUGH INTEGRATED MODELING FCT 17/06/2016 16/12/2019
MIMED Mining the Molecular Metric Space for Drug Design FCT 01/06/2016 30/11/2019
RESISTIR Sistema de Informação para controlo de infecção inteligente e antibioterapia personalizada P2020 01/04/2016 01/04/2019
Acronym Short Description
VETA Tool that analyses the performance of several variant prediction methods at different levels.
KGsim-benchmark A collection of 21 benchmark data sets for large biomedical knowledge graphs similarity evaluation
PPRSSM A entity linking software based on Personalized PageRank using Semantic Similarity Measures
DiShIn A software package provides the basic functions to start using semantic similarity measures directly from a rdf or owl file
MER A Named-Entity Recognition tool which given any lexicon and any input text returns the list of terms recognized in the text, including their exact location
Genodedup GenoDedup is an algorithm that integrates efficient similarity-based deduplication and specialized delta-encoding for genome sequencing data
ChemRecSys ChemRecSys (Chemical Compounds Recommender System)
BiOnt BiOnt is a system to perform relation extraction using a deep learning system
Epidemiology Ontology Aims at increasing the amount of epidemiological data available, improving disease surveillance systems, and promoting the collaboration among epidemiological researchers
AgreementMakerLight An automated and efficient ontology matching system
NAMS A free Webtool to calculate similarity between molecules based on the structural/topological relationships of each atom towards all the others within a molecule
B3PP A web application that interfaces a machine learning model designed to predict the Blood-Brain Barrier penetration properties
DNA Privacy Detector A method that systematically detects privacy-sensitive DNA segments coming directly from an input stream
JDNA A referential compressor for aligned DNA files
Rankores Allows users to vote on news thus helping with their validation and taking advantage of social networks by sharing news we validate
Onde e quem vai ver An app that allow the user to browse, create and share the best events
O Mundo em Pessoa A collaboration project with Sapo Labs for the celebration of the 125th year of birth of Fernando Pessoa
Lusica A project of automatic collection of music quotes of Lusophone artists from the social networks
GIN 2.0 Devised to design primers within microbial species or genus as broad as possible, for PCR gene-screening projects
Missinks A web application that given a search query identifies the links in the first two pages of a given Google country search engine
CMPSim A web tool that implements a novel approach to measure the similarity between chemical compounds and metabolic pathays using semantic similarity
GRYFUN Allows the visualization, filtering and subsequent analysis of Gene Ontology (GO) annotation profiles
CESSM An online tool for the automated evaluation of GO-based semantic similarity measures
Therminfo A cheminformatics system designed and built with two main objectives in mind: collecting and retrieving critically evaluated thermochemical values, and estimating new data
ProteInOn A web tool focused on calculating GO-based protein semantic similarity
CIDS A user-friendly web tool that calculates different citation statistics
fct logo
LASIGE is supported by FCT via projects UIDB/00408/2020
(DOI: 10.54499/UIDB/00408/2020) and UIDP/00408/2020
(DOI: 10.54499/UIDP/00408/2020)

Faculdade de Ciências da Universidade de Lisboa
Departamento de Informática
Edifício C6 Piso 3 - Sala 6.3.30
Campo Grande - 1749 - 016 Lisboa, Portugal

lasige@ciencias.ulisboa.pt

(+351) 217 500 532

LASIGE © Powered by Delta Soluções