Research Lines •
Health and Biomedical Informatics
Leader:
Cátia Pesquita
Alysson Bessani
Integrated Researcher
André Rodrigues
Integrated Researcher
Andreia Sofia Teixeira
Integrated Researcher
Carlos Duarte
Integrated Researcher
Cátia Pesquita
Integrated Researcher
Diogo Soares
Integrated Researcher
Francisco M. Couto
Integrated Researcher
Helena Aidos
Integrated Researcher
João Balsa da Silva
Integrated Researcher
João Bimbo
Integrated Researcher
Luís Carriço
Integrated Researcher
Manuel Fonseca
Integrated Researcher
Márcia Barros
Integrated Researcher
Maria Beatriz do Carmo
Integrated Researcher
Nuno Garcia
Integrated Researcher
Sara C. Madeira
Integrated Researcher
Soraia Meneses Alarcão
Integrated Researcher
Teresa Chambel
Integrated Researcher
Tiago Guerreiro
Integrated Researcher
Vinicius Cogo
Integrated Researcher
Ana Filipa Rodrigues
PhD Collaborator
Rita Sousa
PhD Collaborator
Andreia Martins
Collaborator
Francisca Ayres Ribeiro
Collaborator
Isabel Trancoso
Collaborator
João Pedro Ferreira
Collaborator
Beatriz Lopo Ferreira
PhD Student
Duarte Saraiva
PhD Student
Eduardo Castanho
PhD Student
Eleonora Auletta
PhD Student
Hugo Figueiras
PhD Student
João Pedro Mendes
PhD Student
Laura Balbi
PhD Student
Lisana Daniel
PhD Student
Luana Afonso
PhD Student
Marta Silva
PhD Student
Maryam Lotfi
PhD Student
Matilde Pato
PhD Student
Pedro Cotovio
PhD Student
Ricardo Carvalho
PhD Student
Sofia Conceição
PhD Student
Susana Nunes
PhD Student
Adriana St'Aubyn
MSc Student
Ana Domingos
MSc Student
André G. Santos
MSc Student
André Dias
MSc Student
Beatriz Moreira
MSc Student
Christopher Anaya
MSc Student
Cláudia Afonso
MSc Student
David Conceição
MSc Student
Diogo Malatoto
MSc Student
Donato Aveiro
MSc Student
Filipe M. Santos
MSc Student
Francisco Vicente
MSc Student
Guilherme Cepeda
MSc Student
Hugo Vieira
MSc Student
Inês Marcelino
MSc Student
Joana Carvoeiro
MSc Student
João Gonçalves
MSc Student
João Vedor
MSc Student
João Fernandes
MSc Student
João Rodrigo Silva
MSc Student
Joaquim Simões
MSc Student
Joel Oliveira
MSc Student
José Oliveira
MSc Student
Judite Ramos
MSc Student
Leonor Carvalho
MSc Student
Madalena Girão
MSc Student
Maria Leonor Miranda
MSc Student
Matilde Carvalho
MSc Student
Nélio Pereira
MSc Student
Paulo Silva
MSc Student
Pedro Serrano
MSc Student
Pedro Lage
MSc Student
Rafaela Lopes
MSc Student
Rafaela Rodrigues
MSc Student
Robert Cachapa
MSc Student
Rute Patuleia
MSc Student
Sona Moravcikova
MSc Student
Tiago Assis
MSc Student
Vasco Maria
MSc Student
Filipe Marques
Undergraduate Student
Filipe Dávila Fernandes
Undergraduate Student
ONGOING
| Acronym | Title | Funding Entity | Start Date | End Date |
|---|---|---|---|---|
| HfPT | Health from Portugal | IAPMEI / PRR- Portuguese Resilience and Recovery Plan | 01/02/2023 | 31/12/2025 |
| BRAINTEASER | BRinging Artificial INTelligencE home for a better cAre of amyotrophic lateral sclerosis and multiple SclERosis | EU H2020 | 01/01/2021 | 30/06/2025 |
| KATY | Knowledge At the Tip of Your fingers: Clinical Knowledge for Humanity | EU H2020 | 01/01/2021 | 30/06/2025 |
PAST
| Acronym | Title | Funding Entity | Start Date | End Date |
|---|---|---|---|---|
| AIpALS | Advanced LearnIng Models using Patient Profiles and Disease Progression Patterns for Prognostic Prediction in ALS | FCT | 01/03/2021 | 28/02/2025 |
| CIRCLES | Controlling mIcRobiomes CircuLations for bEtter food Systems | EU H2020 | 01/11/2018 | 31/10/2024 |
| DKG | Distributed Knowledge Graphs | COST ACTION | 23/09/2020 | 22/09/2024 |
| THOR | Computer Assisted Thoracic Assessment using POCUS | FCT | 01/03/2021 | 29/02/2024 |
| DL-CADET | Deep multimodal Learning for breast CAncer DETection | FCT | 01/01/2022 | 30/12/2023 |
| AWESOME | Awareness While Experiencing and Surfing On Movies through Emotions | FCT | 01/10/2018 | 30/09/2022 |
| BINDER | Improving Bio-Inspired Deep Learning for Radiomics | FCT | 01/10/2018 | 30/07/2022 |
| iCare4U | Decision support system for personalized medicine in ICUs | FCT | 01/06/2018 | 31/05/2022 |
| PREDICT | Personalized therapy for RhEumatic DIseases via machine learning | FCT | 01/01/2019 | 31/12/2021 |
| SMiLax | Semantic Mining with Linked Data | FCT | 01/07/2016 | 31/12/2020 |
| NEUROCLINOMICS2 | Unravelling Prognostic Markers in NEUROdegenerative diseases through CLINical and OMICS data integration | FCT | 01/07/2016 | 31/03/2020 |
| PERSEIDS | PERSEIDS – PERSONALIZING CANCER THERAPY THROUGH INTEGRATED MODELING | FCT | 17/06/2016 | 16/12/2019 |
| MIMED | Mining the Molecular Metric Space for Drug Design | FCT | 01/06/2016 | 30/11/2019 |
| RESISTIR | Sistema de Informação para controlo de infecção inteligente e antibioterapia personalizada | P2020 | 01/04/2016 | 01/04/2019 |
| Acronym | Short Description |
|---|---|
| VETA | Tool that analyses the performance of several variant prediction methods at different levels. |
| KGsim-benchmark | A collection of 21 benchmark data sets for large biomedical knowledge graphs similarity evaluation |
| PPRSSM | A entity linking software based on Personalized PageRank using Semantic Similarity Measures |
| DiShIn | A software package provides the basic functions to start using semantic similarity measures directly from a rdf or owl file |
| MER | A Named-Entity Recognition tool which given any lexicon and any input text returns the list of terms recognized in the text, including their exact location |
| Genodedup | GenoDedup is an algorithm that integrates efficient similarity-based deduplication and specialized delta-encoding for genome sequencing data |
| ChemRecSys | ChemRecSys (Chemical Compounds Recommender System) |
| BiOnt | BiOnt is a system to perform relation extraction using a deep learning system |
| Epidemiology Ontology | Aims at increasing the amount of epidemiological data available, improving disease surveillance systems, and promoting the collaboration among epidemiological researchers |
| AgreementMakerLight | An automated and efficient ontology matching system |
| NAMS | A free Webtool to calculate similarity between molecules based on the structural/topological relationships of each atom towards all the others within a molecule |
| B3PP | A web application that interfaces a machine learning model designed to predict the Blood-Brain Barrier penetration properties |
| DNA Privacy Detector | A method that systematically detects privacy-sensitive DNA segments coming directly from an input stream |
| JDNA | A referential compressor for aligned DNA files |
| Rankores | Allows users to vote on news thus helping with their validation and taking advantage of social networks by sharing news we validate |
| Onde e quem vai ver | An app that allow the user to browse, create and share the best events |
| O Mundo em Pessoa | A collaboration project with Sapo Labs for the celebration of the 125th year of birth of Fernando Pessoa |
| Lusica | A project of automatic collection of music quotes of Lusophone artists from the social networks |
| GIN 2.0 | Devised to design primers within microbial species or genus as broad as possible, for PCR gene-screening projects |
| Missinks | A web application that given a search query identifies the links in the first two pages of a given Google country search engine |
| CMPSim | A web tool that implements a novel approach to measure the similarity between chemical compounds and metabolic pathays using semantic similarity |
| GRYFUN | Allows the visualization, filtering and subsequent analysis of Gene Ontology (GO) annotation profiles |
| CESSM | An online tool for the automated evaluation of GO-based semantic similarity measures |
| Therminfo | A cheminformatics system designed and built with two main objectives in mind: collecting and retrieving critically evaluated thermochemical values, and estimating new data |
| ProteInOn | A web tool focused on calculating GO-based protein semantic similarity |
| CIDS | A user-friendly web tool that calculates different citation statistics |
